Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asnc family transcriptional regulator | DD563_10755 | Not Available | Negative | 2184636 - 2185094 | 16651.3 |
| alanine dehydrogenase | DD563_10760 | Not Available | Positive | 2185231 - 2186349 | 38534.7 |
| hypothetical protein | DD563_10765 | Not Available | Negative | 2186557 - 2187456 | 34215.5 |
| aminotransferase | DD563_10770 | Not Available | Positive | 2187842 - 2189014 | 41667.1 |
| hypothetical protein | DD563_10775 | Not Available | Negative | 2189058 - 2189762 | 23865.9 |
| hypothetical protein | DD563_10780 | Not Available | Positive | 2190260 - 2191873 | 59248.8 |
| 2-keto-gluconate dehydrogenase | DD563_10785 | Not Available | Negative | 2192085 - 2193653 | 56862.4 |
| twin-arginine translocation pathway signal | DD563_10790 | Not Available | Negative | 2193668 - 2194189 | 18831.2 |
| lactoylglutathione lyase | DD563_10795 | Not Available | Negative | 2194214 - 2194609 | 15307.0 |
| dna-binding protein | DD563_10800 | Not Available | Negative | 2194698 - 2194982 | 10469.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
