Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(55) synthase trub | DD563_10705 | Not Available | Positive | 2174530 - 2175474 | 33531.6 |
| hypothetical protein | DD563_10710 | Not Available | Positive | 2175471 - 2175992 | 19384.9 |
| type i secretion protein | DD563_10715 | Not Available | Positive | 2176098 - 2177351 | 42110.8 |
| 30s ribosomal protein s15 | DD563_10720 | Not Available | Positive | 2177529 - 2177798 | 10342.6 |
| hypothetical protein | DD563_10725 | Not Available | Positive | 2177935 - 2178258 | 11311.5 |
| polyribonucleotide nucleotidyltransferase | DD563_10730 | Not Available | Positive | 2178450 - 2180591 | 77253.4 |
| cell filamentation protein fic | DD563_10735 | Not Available | Positive | 2180784 - 2181941 | 43612.2 |
| acyltransferase | DD563_10740 | Not Available | Positive | 2182043 - 2182918 | 32368.2 |
| quinone oxidoreductase | DD563_10745 | Not Available | Negative | 2183151 - 2184125 | 34040.1 |
| qace family quaternary ammonium compound efflux smr transporter | DD563_10750 | Not Available | Negative | 2184203 - 2184526 | 11430.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
