Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase | DD563_10655 | Not Available | Negative | 2164770 - 2166356 | 55578.1 |
| heparinase | DD563_10660 | Not Available | Negative | 2166389 - 2168128 | 62246.9 |
| 16s rrna methyltransferase | DD563_10665 | Not Available | Negative | 2168234 - 2169514 | 44876.1 |
| duf1674 domain-containing protein | DD563_10670 | Not Available | Positive | 2169579 - 2169764 | 6679.92 |
| dihydrodipicolinate reductase | DD563_10675 | Not Available | Negative | 2169775 - 2170146 | 13543.3 |
| aminotransferase | DD563_10680 | Not Available | Positive | 2170232 - 2171365 | 41925.9 |
| hypothetical protein | DD563_10685 | Not Available | Negative | 2171366 - 2172346 | 35903.0 |
| 4-hydroxy-tetrahydrodipicolinate reductase | DD563_10690 | Not Available | Negative | 2172354 - 2173178 | 28585.2 |
| 30s ribosome-binding factor rbfa | DD563_10695 | Not Available | Positive | 2173263 - 2173718 | 16764.7 |
| hypothetical protein | DD563_10700 | Not Available | Positive | 2173723 - 2174472 | 26451.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
