Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_10605 | Not Available | Positive | 2152921 - 2153613 | 24098.4 |
| cell envelope biogenesis protein ompa | DD563_10610 | Not Available | Positive | 2153639 - 2155195 | 55980.4 |
| hypothetical protein | DD563_10615 | Not Available | Negative | 2155207 - 2155974 | 28215.9 |
| 5-oxoprolinase | DD563_10620 | Not Available | Negative | 2156190 - 2159765 | 127069.0 |
| tigr01244 family phosphatase | DD563_10625 | Not Available | Positive | 2159887 - 2160303 | 14872.7 |
| hypothetical protein | DD563_10630 | Not Available | Positive | 2160309 - 2160965 | 22285.0 |
| peptidase m16 | DD563_10635 | Not Available | Negative | 2160951 - 2162264 | 46402.9 |
| peptidase m16 | DD563_10640 | Not Available | Negative | 2162261 - 2163592 | 48903.7 |
| duf3035 domain-containing protein | DD563_10645 | Not Available | Negative | 2163683 - 2164207 | 18567.0 |
| signal peptidase ii | DD563_10650 | Not Available | Negative | 2164260 - 2164730 | 17340.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
