Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-ketoacyl-acp synthase i | DD563_00940 | Not Available | Positive | 192333 - 193562 | 42072.1 |
| nadh-specific enoyl-acp reductase | DD563_00945 | Not Available | Positive | 193568 - 194359 | 27660.0 |
| hypothetical protein | DD563_00950 | Not Available | Negative | 194465 - 195325 | 31249.2 |
| hypothetical protein | DD563_00955 | Not Available | Negative | 195553 - 196422 | 33128.9 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DD563_00960 | Not Available | Positive | 196535 - 197857 | 48689.2 |
| cell envelope biogenesis protein ompa | DD563_00965 | Not Available | Positive | 198171 - 198674 | 18303.4 |
| hypothetical protein | DD563_00970 | Not Available | Positive | 198686 - 198988 | 10518.6 |
| phosphate starvation-inducible protein phoh | DD563_00975 | Not Available | Positive | 199169 - 200176 | 36479.3 |
| rrna maturation rnase ybey | DD563_00980 | Not Available | Positive | 200169 - 200672 | 17751.7 |
| magnesium/cobalt efflux protein | DD563_00985 | Not Available | Positive | 200710 - 201708 | 35779.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
