Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prolyl aminopeptidase | DD563_10555 | Not Available | Positive | 2138438 - 2139409 | 36088.9 |
| hypothetical protein | DD563_10560 | Not Available | Negative | 2139406 - 2139924 | 19074.5 |
| ribosome maturation factor rimp | DD563_10565 | Not Available | Positive | 2141296 - 2141871 | 21004.9 |
| transcription termination/antitermination protein nusa | DD563_10570 | Not Available | Positive | 2141875 - 2143497 | 60197.1 |
| rna-binding protein | DD563_10575 | Not Available | Positive | 2143521 - 2144153 | 22624.3 |
| translation initiation factor if-2 | DD563_10580 | Not Available | Positive | 2144150 - 2146645 | 88694.4 |
| 8-oxo-dgtp diphosphatase mutt | DD563_10585 | Not Available | Negative | 2147064 - 2147462 | 14794.1 |
| bifunctional ornithine acetyltransferase/n-acetylglutamate synthase | DD563_10590 | Not Available | Negative | 2147459 - 2148688 | 42081.3 |
| peptidylprolyl isomerase | DD563_10595 | Not Available | Negative | 2148693 - 2149547 | 30385.8 |
| preprotein translocase subunit seca | DD563_10600 | Not Available | Positive | 2149739 - 2152471 | 101059.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
