Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_10505 | Not Available | Negative | 2131624 - 2132142 | 18765.3 |
| hypothetical protein | DD563_10510 | Not Available | Positive | 2132318 - 2132920 | 22275.4 |
| hypothetical protein | DD563_10515 | Not Available | Positive | 2133065 - 2133253 | 6126.56 |
| ferrochelatase | DD563_10520 | Not Available | Negative | 2133356 - 2134420 | 40112.6 |
| sam-dependent methyltransferase | DD563_10525 | Not Available | Negative | 2134478 - 2135299 | 29624.7 |
| amidophosphoribosyltransferase | DD563_10530 | Not Available | Positive | 2135347 - 2136054 | 25032.6 |
| glutaredoxin 3 | DD563_10535 | Not Available | Positive | 2136094 - 2136351 | 9232.18 |
| amidohydrolase | DD563_10540 | Not Available | Positive | 2136355 - 2137194 | 29694.5 |
| marr family transcriptional regulator | DD563_10545 | Not Available | Positive | 2137191 - 2137637 | 16263.6 |
| bifunctional 3-demethylubiquinol 3-o-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase | DD563_10550 | Not Available | Negative | 2137642 - 2138388 | 27627.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
