Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate synthase | DD563_10455 | Not Available | Negative | 2122143 - 2123369 | 45201.9 |
| threonine dehydratase | DD563_10460 | Not Available | Positive | 2123531 - 2124766 | 44590.7 |
| histidine kinase | DD563_10465 | Not Available | Negative | 2124767 - 2125099 | 12015.0 |
| fused response regulator/phosphatase | DD563_10470 | Not Available | Positive | 2125227 - 2126540 | 47681.1 |
| nudix hydrolase | DD563_10475 | Not Available | Negative | 2126515 - 2126958 | 16635.2 |
| molecular chaperone hsp33 | DD563_10480 | Not Available | Positive | 2127040 - 2128035 | 35768.1 |
| coa pyrophosphatase | DD563_10485 | Not Available | Positive | 2128073 - 2128624 | 20022.2 |
| cca trna nucleotidyltransferase | DD563_10490 | Not Available | Positive | 2128621 - 2129772 | 40554.6 |
| class i sam-dependent rna methyltransferase | DD563_10495 | Not Available | Positive | 2129769 - 2131001 | 43230.9 |
| hypothetical protein | DD563_10500 | Not Available | Positive | 2131068 - 2131568 | 18224.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
