Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coproporphyrinogen iii oxidase | DD563_10405 | Not Available | Negative | 2110328 - 2111485 | 42708.6 |
| non-canonical purine ntp pyrophosphatase, rdgb/ham1 family | DD563_10410 | Not Available | Negative | 2111478 - 2112086 | 21754.5 |
| ribonuclease ph | DD563_10415 | Not Available | Negative | 2112079 - 2112795 | 25393.7 |
| heat-inducible transcriptional repressor hrca | DD563_10420 | Not Available | Positive | 2112915 - 2113979 | 38596.1 |
| nucleotide exchange factor grpe | DD563_10425 | Not Available | Positive | 2113991 - 2114551 | 20844.4 |
| dna mismatch repair protein muts | DD563_10430 | Not Available | Negative | 2114656 - 2117286 | 95151.1 |
| nadp-dependent malic enzyme | DD563_10435 | Not Available | Positive | 2117442 - 2119697 | 80695.1 |
| peptide-methionine (s)-s-oxide reductase | DD563_10440 | Not Available | Negative | 2119702 - 2120370 | 24058.5 |
| aminotransferase class iv | DD563_10445 | Not Available | Positive | 2120526 - 2121431 | 32921.6 |
| sulfotransferase family protein | DD563_10450 | Not Available | Positive | 2121431 - 2122138 | 25563.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
