Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dephospho-coa kinase | DD563_10355 | Not Available | Negative | 2100543 - 2101133 | 20976.3 |
| shikimate dehydrogenase | DD563_10360 | Not Available | Negative | 2101130 - 2101963 | 29482.1 |
| septum formation protein maf | DD563_10365 | Not Available | Negative | 2101960 - 2102559 | 22010.6 |
| protoporphyrinogen oxidase hemj | DD563_10370 | Not Available | Positive | 2102968 - 2103417 | 17280.6 |
| transcription termination factor rho | DD563_10375 | Not Available | Positive | 2103547 - 2104818 | 47575.2 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DD563_10380 | Not Available | Positive | 2104832 - 2106112 | 44525.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DD563_10385 | Not Available | Positive | 2106125 - 2107993 | 67632.0 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | DD563_10390 | Not Available | Positive | 2107990 - 2108601 | 22254.7 |
| chromosome partitioning protein para | DD563_10395 | Not Available | Positive | 2108594 - 2109403 | 29367.3 |
| chromosome partitioning protein parb | DD563_10400 | Not Available | Positive | 2109420 - 2110331 | 32764.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
