Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DD563_10305 | Not Available | Positive | 2092627 - 2092947 | 11220.4 |
| hslu--hslv peptidase proteolytic subunit | DD563_10310 | Not Available | Positive | 2093058 - 2093621 | 19667.4 |
| hslu--hslv peptidase atpase subunit | DD563_10315 | Not Available | Positive | 2093655 - 2094962 | 47988.5 |
| mfs transporter | DD563_10320 | Not Available | Positive | 2095144 - 2096367 | 44264.2 |
| dna mismatch repair protein muts | DD563_10325 | Not Available | Negative | 2096350 - 2096937 | 21705.7 |
| murein transglycosylase | DD563_10330 | Not Available | Negative | 2096963 - 2098000 | 37955.5 |
| preprotein translocase subunit tim44 | DD563_10335 | Not Available | Negative | 2097997 - 2098656 | 23908.5 |
| exlusion protein fxsa | DD563_10340 | Not Available | Positive | 2098766 - 2099260 | 17760.9 |
| protein-export chaperone secb | DD563_10345 | Not Available | Positive | 2099328 - 2099861 | 19792.9 |
| dna polymerase iii subunit epsilon | DD563_10350 | Not Available | Negative | 2099846 - 2100550 | 26073.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
