Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | DD563_10255 | Not Available | Positive | 2079145 - 2079630 | 17298.9 |
| two-component system response regulator | DD563_10260 | Not Available | Negative | 2079728 - 2080279 | 20067.0 |
| sco family protein | DD563_10265 | Not Available | Negative | 2080358 - 2080984 | 22279.3 |
| two-component sensor histidine kinase | DD563_10270 | Not Available | Positive | 2081077 - 2082465 | 50743.6 |
| hypothetical protein | DD563_10275 | Not Available | Positive | 2082570 - 2084105 | 56175.2 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DD563_10280 | Not Available | Positive | 2084154 - 2084627 | 17311.6 |
| aminoglycoside phosphotransferase | DD563_10285 | Not Available | Positive | 2084624 - 2085634 | 36912.3 |
| nucleotidyltransferase | DD563_10290 | Not Available | Positive | 2085619 - 2086293 | 23791.9 |
| double-strand break repair protein addb | DD563_10295 | Not Available | Positive | 2086286 - 2089210 | 106429.0 |
| double-strand break repair helicase adda | DD563_10300 | Not Available | Positive | 2089207 - 2092563 | 121621.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
