Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| intracellular septation protein a | DD563_10200 | Not Available | Positive | 2068475 - 2069077 | 22783.3 |
| glutathione s-transferase | DD563_10205 | Not Available | Negative | 2069114 - 2069818 | 26131.2 |
| o-succinylhomoserine sulfhydrylase | DD563_10210 | Not Available | Positive | 2070028 - 2071206 | 41738.0 |
| d-2-hydroxyacid dehydrogenase | DD563_10220 | Not Available | Positive | 2072229 - 2073203 | 34480.4 |
| dihydrodipicolinate synthase family protein | DD563_10225 | Not Available | Positive | 2073300 - 2074199 | 31549.9 |
| gtp cyclohydrolase i fole2 | DD563_10230 | Not Available | Negative | 2074263 - 2075363 | 41089.4 |
| duf2853 domain-containing protein | DD563_10235 | Not Available | Negative | 2075554 - 2075895 | 12456.0 |
| hypothetical protein | DD563_10240 | Not Available | Positive | 2076174 - 2076932 | 27768.8 |
| adenosylhomocysteinase | DD563_10245 | Not Available | Negative | 2077001 - 2078389 | 50725.9 |
| hypothetical protein | DD563_10250 | Not Available | Positive | 2078555 - 2079148 | 21813.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
