Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar:cation symporter | DD563_10150 | Not Available | Negative | 2057726 - 2058937 | 42412.8 |
| duf1365 domain-containing protein | DD563_10155 | Not Available | Negative | 2058934 - 2059689 | 27879.3 |
| cyclopropane-fatty-acyl-phospholipid synthase | DD563_10160 | Not Available | Negative | 2059686 - 2060978 | 46955.6 |
| rna polymerase subunit sigma | DD563_10165 | Not Available | Positive | 2061100 - 2061765 | 24720.5 |
| transcriptional regulator | DD563_10170 | Not Available | Positive | 2061775 - 2062422 | 22499.1 |
| nadph-dependent 2,4-dienoyl-coa reductase | DD563_10175 | Not Available | Positive | 2062495 - 2064519 | 71708.1 |
| hypothetical protein | DD563_10180 | Not Available | Negative | 2064573 - 2064968 | 14752.2 |
| alkane 1-monooxygenase | DD563_10185 | Not Available | Negative | 2065040 - 2066065 | 37352.0 |
| signal recognition particle-docking protein ftsy | DD563_10190 | Not Available | Positive | 2066239 - 2067516 | 45133.9 |
| multidrug transporter | DD563_10195 | Not Available | Positive | 2067548 - 2068450 | 32629.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
