Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DD563_10100 | Not Available | Negative | 2048876 - 2049571 | 25093.0 |
| abc transporter atp-binding protein | DD563_10105 | Not Available | Negative | 2049571 - 2050266 | 24484.6 |
| branched-chain amino acid abc transporter permease | DD563_10110 | Not Available | Negative | 2050263 - 2051207 | 33667.3 |
| branched-chain amino acid abc transporter permease | DD563_10115 | Not Available | Negative | 2051204 - 2052130 | 32587.3 |
| haloacid dehalogenase type ii | DD563_10120 | Not Available | Negative | 2052137 - 2052862 | 27350.1 |
| branched-chain amino acid abc transporter substrate-binding protein | DD563_10125 | Not Available | Negative | 2052984 - 2054270 | 46977.6 |
| hypothetical protein | DD563_10130 | Not Available | Negative | 2054360 - 2055742 | 49588.3 |
| hypothetical protein | DD563_10135 | Not Available | Negative | 2056035 - 2056361 | 11727.7 |
| short-chain dehydrogenase | DD563_10140 | Not Available | Negative | 2056426 - 2057160 | 26070.4 |
| duf3833 domain-containing protein | DD563_10145 | Not Available | Negative | 2057161 - 2057721 | 20638.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
