Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine ammonia-lyase | DD563_00890 | Not Available | Negative | 184781 - 185764 | 33906.0 |
| alpha/beta hydrolase | DD563_00895 | Not Available | Negative | 185761 - 186591 | 30046.8 |
| haloacid dehalogenase type ii | DD563_00900 | Not Available | Negative | 186591 - 187280 | 24792.6 |
| peptidylprolyl isomerase | DD563_00905 | Not Available | Positive | 187461 - 187889 | 15083.9 |
| zinc-binding dehydrogenase | DD563_00910 | Not Available | Negative | 187886 - 188872 | 33566.5 |
| transcriptional repressor | DD563_00915 | Not Available | Negative | 188872 - 189321 | 16297.0 |
| beta-hydroxydecanoyl-acp dehydratase | DD563_00920 | Not Available | Positive | 189508 - 190017 | 18589.6 |
| n-acetyltransferase | DD563_00925 | Not Available | Negative | 190087 - 190923 | 29510.7 |
| hypothetical protein | DD563_00930 | Not Available | Positive | 191150 - 191821 | 24139.7 |
| hypothetical protein | DD563_00935 | Not Available | Negative | 191836 - 192105 | 9452.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
