Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| saccharopine dehydrogenase | DD563_10000 | Not Available | Positive | 2026820 - 2027953 | 41323.2 |
| rho termination factor | DD563_10005 | Not Available | Negative | 2027960 - 2028220 | 9445.06 |
| hypothetical protein | DD563_10010 | Not Available | Negative | 2028224 - 2028436 | 7531.78 |
| nicotinate phosphoribosyltransferase | DD563_10015 | Not Available | Negative | 2028501 - 2029793 | 49496.2 |
| hypothetical protein | DD563_10020 | Not Available | Positive | 2029978 - 2032536 | 87318.4 |
| sulfotransferase | DD563_10025 | Not Available | Positive | 2032597 - 2033460 | 33550.8 |
| sugar abc transporter permease | DD563_10030 | Not Available | Negative | 2033464 - 2034267 | 29552.1 |
| capsule biosynthesis protein | DD563_10035 | Not Available | Positive | 2034405 - 2035544 | 42480.7 |
| abc transporter atp-binding protein | DD563_10040 | Not Available | Positive | 2035548 - 2036219 | 24118.2 |
| hypothetical protein | DD563_10045 | Not Available | Negative | 2036227 - 2037486 | 46541.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
