Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide-methionine (s)-s-oxide reductase | DD563_09950 | Not Available | Negative | 2018018 - 2018524 | 18878.2 |
| peptide-methionine (r)-s-oxide reductase | DD563_09955 | Not Available | Negative | 2018521 - 2018970 | 16383.9 |
| glutathione peroxidase | DD563_09960 | Not Available | Positive | 2019110 - 2019628 | 18539.1 |
| hydantoinase | DD563_09965 | Not Available | Negative | 2019651 - 2021651 | 69308.2 |
| trna epoxyqueuosine(34) reductase queg | DD563_09970 | Not Available | Negative | 2021699 - 2022775 | 39495.0 |
| glutathione s-transferase | DD563_09975 | Not Available | Negative | 2022862 - 2023527 | 25853.9 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DD563_09980 | Not Available | Negative | 2023586 - 2024314 | 26897.6 |
| histidine phosphatase family protein | DD563_09985 | Not Available | Positive | 2024476 - 2025126 | 23904.4 |
| glutathione s-transferase | DD563_09990 | Not Available | Positive | 2025155 - 2025772 | 22215.0 |
| saccharopine dehydrogenase | DD563_09995 | Not Available | Positive | 2025769 - 2026818 | 37336.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
