Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine abc transporter substrate-binding protein | DD563_09900 | Not Available | Negative | 2006767 - 2007870 | 40127.2 |
| spermidine/putrescine abc transporter atp-binding protein | DD563_09905 | Not Available | Negative | 2007988 - 2009088 | 40818.2 |
| aspartate aminotransferase family protein | DD563_09910 | Not Available | Negative | 2009364 - 2010758 | 50771.7 |
| gntr family transcriptional regulator | DD563_09915 | Not Available | Negative | 2010860 - 2011561 | 25338.4 |
| spermidine/putrescine abc transporter substrate-binding protein potf | DD563_09920 | Not Available | Positive | 2011710 - 2012795 | 39218.1 |
| polyamine abc transporter atp-binding protein | DD563_09925 | Not Available | Positive | 2012872 - 2013996 | 41492.1 |
| putrescine/spermidine abc transporter permease | DD563_09930 | Not Available | Positive | 2014002 - 2014892 | 33133.2 |
| putrescine abc transporter permease poti | DD563_09935 | Not Available | Positive | 2014889 - 2015704 | 29318.4 |
| fad-dependent oxidoreductase | DD563_09940 | Not Available | Positive | 2015701 - 2017026 | 48664.8 |
| eama family transporter | DD563_09945 | Not Available | Negative | 2017023 - 2017946 | 32485.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
