Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygen-dependent coproporphyrinogen oxidase | DD563_09845 | Not Available | Positive | 1995534 - 1996424 | 32797.3 |
| endonuclease | DD563_09850 | Not Available | Negative | 1996421 - 1997566 | 40997.7 |
| 3-isopropylmalate dehydratase small subunit | DD563_09860 | Not Available | Negative | 1998581 - 1999186 | 22012.4 |
| 3-isopropylmalate dehydratase large subunit | DD563_09865 | Not Available | Negative | 1999186 - 2000589 | 50041.6 |
| hypothetical protein | DD563_09870 | Not Available | Negative | 2000650 - 2000736 | 3296.12 |
| dna-binding response regulator | DD563_09875 | Not Available | Negative | 2001084 - 2001785 | 26357.2 |
| marr family transcriptional regulator | DD563_09880 | Not Available | Negative | 2001782 - 2002279 | 18649.2 |
| branched-chain amino acid aminotransferase | DD563_09885 | Not Available | Positive | 2002444 - 2003310 | 31851.8 |
| polyamine abc transporter permease | DD563_09890 | Not Available | Negative | 2003997 - 2004881 | 32502.8 |
| abc transporter permease | DD563_09895 | Not Available | Negative | 2004888 - 2006546 | 61083.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
