Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m48 family peptidase | DD563_09795 | Not Available | Positive | 1987620 - 1988303 | 25043.1 |
| gntr family transcriptional regulator | DD563_09800 | Not Available | Positive | 1988335 - 1988982 | 23811.2 |
| acetyl-coa carboxylase carboxyl transferase subunit alpha | DD563_09805 | Not Available | Negative | 1988979 - 1989941 | 34373.5 |
| hypothetical protein | DD563_09810 | Not Available | Negative | 1989998 - 1990627 | 21470.2 |
| hypothetical protein | DD563_09815 | Not Available | Negative | 1990642 - 1991244 | 21957.7 |
| cell division protein zape | DD563_09820 | Not Available | Positive | 1991449 - 1992504 | 39038.0 |
| had family hydrolase | DD563_09825 | Not Available | Negative | 1992501 - 1993205 | 25457.6 |
| atp-dependent clp protease adapter clps | DD563_09830 | Not Available | Positive | 1993297 - 1993629 | 12414.1 |
| mfs transporter | DD563_09835 | Not Available | Positive | 1993637 - 1994626 | 35023.9 |
| oxidoreductase | DD563_09840 | Not Available | Positive | 1994678 - 1995481 | 28518.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
