Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate dehydrogenase | DD563_09740 | Not Available | Positive | 1976151 - 1977113 | 33549.7 |
| hypothetical protein | DD563_09750 | Not Available | Negative | 1977867 - 1978859 | 37020.0 |
| adp-forming succinate--coa ligase subunit beta | DD563_09755 | Not Available | Positive | 1979139 - 1980332 | 42442.2 |
| succinate--coa ligase subunit alpha | DD563_09760 | Not Available | Positive | 1980465 - 1981346 | 30454.8 |
| hypothetical protein | DD563_09765 | Not Available | Positive | 1981347 - 1981526 | 6502.84 |
| 2-oxoglutarate dehydrogenase e1 component | DD563_09770 | Not Available | Positive | 1981573 - 1984530 | 110257.0 |
| dihydrolipoamide succinyltransferase | DD563_09775 | Not Available | Positive | 1984534 - 1986042 | 52083.4 |
| hypothetical protein | DD563_09780 | Not Available | Positive | 1986500 - 1986898 | 14168.7 |
| Trna-ala | Not Available | Not Available | Positive | 1987010 - 1987085 | Not Available |
| tigr02300 family protein | DD563_09790 | Not Available | Negative | 1987174 - 1987503 | 11996.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
