Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase iron-sulfur subunit | DD563_09690 | Not Available | Negative | 1968799 - 1969578 | 29564.9 |
| succinate dehydrogenase | DD563_09695 | Not Available | Negative | 1969603 - 1969920 | 10464.6 |
| succinate dehydrogenase flavoprotein subunit | DD563_09700 | Not Available | Negative | 1969920 - 1971725 | 65146.1 |
| succinate dehydrogenase, hydrophobic membrane anchor protein | DD563_09705 | Not Available | Negative | 1971744 - 1972115 | 13094.3 |
| succinate dehydrogenase, cytochrome b556 subunit | DD563_09710 | Not Available | Negative | 1972130 - 1972513 | 14014.6 |
| hypothetical protein | DD563_09715 | Not Available | Negative | 1972867 - 1973898 | 37563.5 |
| hypothetical protein | DD563_09720 | Not Available | Negative | 1973901 - 1974104 | 7451.69 |
| hypothetical protein | DD563_09725 | Not Available | Negative | 1974108 - 1974659 | 19806.3 |
| coa ester lyase | DD563_09730 | Not Available | Negative | 1974659 - 1975519 | 30777.2 |
| hypothetical protein | DD563_09735 | Not Available | Positive | 1975720 - 1976028 | 10609.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
