Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| potassium transporter | DD563_09640 | Not Available | Positive | 1955455 - 1956792 | 50932.7 |
| gmp synthase | DD563_09645 | Not Available | Positive | 1956792 - 1957502 | 25058.0 |
| cyanoglobin | DD563_09650 | Not Available | Negative | 1957499 - 1957900 | 15157.1 |
| aminomethyltransferase | DD563_09655 | Not Available | Negative | 1957897 - 1960266 | 87011.3 |
| cytochrome oxidase subunit iii | DD563_09660 | Not Available | Positive | 1960383 - 1960547 | 6209.85 |
| hypothetical protein | DD563_09665 | Not Available | Positive | 1960548 - 1961393 | 29027.3 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | DD563_09670 | Not Available | Negative | 1961390 - 1962280 | 30854.8 |
| formate--tetrahydrofolate ligase | DD563_09675 | Not Available | Negative | 1962447 - 1964123 | 59503.8 |
| formate dehydrogenase subunit alpha | DD563_09680 | Not Available | Negative | 1964198 - 1966963 | 99790.8 |
| nadh-quinone oxidoreductase subunit f | DD563_09685 | Not Available | Negative | 1966960 - 1968660 | 60744.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
