Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin--nadp(+) reductase | DD563_09590 | Not Available | Negative | 1943942 - 1944904 | 35609.3 |
| hypothetical protein | DD563_09595 | Not Available | Negative | 1944901 - 1945497 | 21884.5 |
| aminomethyltransferase | DD563_09600 | Not Available | Negative | 1945585 - 1946733 | 42098.4 |
| ammonium transporter | DD563_09605 | Not Available | Negative | 1947095 - 1948492 | 48707.7 |
| glutamine amidotransferase | DD563_09610 | Not Available | Positive | 1948694 - 1949623 | 33399.9 |
| protein glxc | DD563_09615 | Not Available | Positive | 1949624 - 1950301 | 23740.2 |
| fmn-binding glutamate synthase family protein | DD563_09620 | Not Available | Positive | 1950312 - 1951655 | 47848.1 |
| type iii glutamate--ammonia ligase | DD563_09625 | Not Available | Positive | 1951760 - 1953088 | 48974.2 |
| fadr family transcriptional regulator | DD563_09630 | Not Available | Positive | 1953223 - 1953945 | 26179.3 |
| abc transporter substrate-binding protein | DD563_09635 | Not Available | Negative | 1954005 - 1955282 | 45979.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
