Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtmp kinase | DD563_00840 | Not Available | Positive | 174958 - 175599 | 22897.1 |
| dna polymerase iii subunit delta' | DD563_00845 | Not Available | Positive | 175596 - 176717 | 39343.4 |
| luxr family transcriptional regulator | DD563_00850 | Not Available | Positive | 176744 - 177550 | 29006.5 |
| phosphoribosyl 1,2-cyclic phosphodiesterase | DD563_00855 | Not Available | Positive | 177547 - 178359 | 29639.4 |
| aec family transporter | DD563_00860 | Not Available | Positive | 178365 - 179294 | 32470.5 |
| isomerase | DD563_00865 | Not Available | Negative | 179321 - 180550 | 43759.4 |
| phosphodiesterase | DD563_00870 | Not Available | Negative | 180547 - 181128 | 21079.7 |
| gamma-butyrobetaine dioxygenase | DD563_00875 | Not Available | Negative | 181125 - 182267 | 41119.5 |
| zinc-binding dehydrogenase | DD563_00880 | Not Available | Negative | 182293 - 183384 | 37023.6 |
| tetracycline resistance mfs efflux pump | DD563_00885 | Not Available | Negative | 183463 - 184668 | 41808.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
