Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DD563_09540 | Not Available | Negative | 1934291 - 1935559 | 44360.0 |
| hypothetical protein | DD563_09545 | Not Available | Negative | 1935566 - 1935754 | 6430.45 |
| Trna-thr | Not Available | Not Available | Positive | 1935840 - 1935914 | Not Available |
| hypothetical protein | DD563_09555 | Not Available | Positive | 1936160 - 1936435 | 10038.2 |
| glycine/betaine abc transporter permease | DD563_09560 | Not Available | Negative | 1936432 - 1938411 | 72179.9 |
| abc transporter atp-binding protein | DD563_09565 | Not Available | Negative | 1938411 - 1939427 | 37676.4 |
| glycine/betaine abc transporter substrate-binding protein | DD563_09570 | Not Available | Negative | 1939507 - 1940448 | 34487.4 |
| glycine/betaine abc transporter substrate-binding protein | DD563_09575 | Not Available | Negative | 1940822 - 1941778 | 34647.5 |
| merr family transcriptional regulator | DD563_09580 | Not Available | Positive | 1942211 - 1942846 | 23448.8 |
| hypothetical protein | DD563_09585 | Not Available | Negative | 1942865 - 1943932 | 41787.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
