Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol-phosphate transaminase | DD563_09490 | Not Available | Negative | 1926101 - 1927186 | 38827.3 |
| 30s ribosomal protein s4 | DD563_09495 | Not Available | Negative | 1927311 - 1927931 | 23637.6 |
| hemolysin-type calcium-binding protein | DD563_09500 | Not Available | Negative | 1928268 - 1929332 | 38667.3 |
| duf2219 domain-containing protein | DD563_09505 | Not Available | Negative | 1929434 - 1930351 | 32968.8 |
| gnat family n-acetyltransferase | DD563_09510 | Not Available | Negative | 1930497 - 1931081 | 21577.4 |
| isopropylmalate/homocitrate/citramalate synthase | DD563_09515 | Not Available | Negative | 1931081 - 1931473 | 14477.8 |
| low molecular weight phosphatase family protein | DD563_09520 | Not Available | Negative | 1931506 - 1931964 | 17233.4 |
| hypothetical protein | DD563_09525 | Not Available | Negative | 1931968 - 1932447 | 18218.7 |
| histidinol dehydrogenase | DD563_09530 | Not Available | Negative | 1932513 - 1933814 | 45245.8 |
| duf2948 domain-containing protein | DD563_09535 | Not Available | Negative | 1933827 - 1934294 | 16862.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
