Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_09440 | Not Available | Negative | 1914805 - 1915551 | 27712.8 |
| hydroxyacylglutathione hydrolase | DD563_09445 | Not Available | Positive | 1915617 - 1916399 | 27655.0 |
| atp-dependent clp protease atp-binding subunit clpa | DD563_09450 | Not Available | Positive | 1916546 - 1918876 | 84778.6 |
| peptidase m24 | DD563_09455 | Not Available | Positive | 1918876 - 1919844 | 34122.2 |
| peptidoglycan-binding protein | DD563_09460 | Not Available | Negative | 1919845 - 1921482 | 58828.2 |
| biopolymer transporter exbb | DD563_09465 | Not Available | Negative | 1921486 - 1922643 | 42095.2 |
| gamma-glutamylcyclotransferase | DD563_09470 | Not Available | Negative | 1922710 - 1923240 | 19108.8 |
| duf2125 domain-containing protein | DD563_09475 | Not Available | Positive | 1923308 - 1924315 | 35719.6 |
| extensin-like protein | DD563_09480 | Not Available | Negative | 1924318 - 1925190 | 30587.8 |
| prephenate/arogenate dehydrogenase family protein | DD563_09485 | Not Available | Negative | 1925187 - 1926104 | 32763.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
