Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| low specificity l-threonine aldolase | DD563_09390 | Not Available | Positive | 1905381 - 1906427 | 37640.7 |
| alpha/beta hydrolase | DD563_09395 | Not Available | Negative | 1906454 - 1907260 | 27874.9 |
| 2-hydroxychromene-2-carboxylate isomerase | DD563_09400 | Not Available | Negative | 1907264 - 1907863 | 21356.3 |
| phosphoribosylpyrophosphate synthetase | DD563_09405 | Not Available | Positive | 1907969 - 1908985 | 36670.4 |
| hypothetical protein | DD563_09410 | Not Available | Negative | 1909013 - 1909363 | 13626.8 |
| atp synthase f1 subunit epsilon | DD563_09415 | Not Available | Negative | 1909485 - 1909910 | 14826.8 |
| f0f1 atp synthase subunit beta | DD563_09420 | Not Available | Negative | 1909981 - 1911405 | 50438.1 |
| f0f1 atp synthase subunit gamma | DD563_09425 | Not Available | Negative | 1911428 - 1912306 | 31580.8 |
| f0f1 atp synthase subunit alpha | DD563_09430 | Not Available | Negative | 1912322 - 1913860 | 54880.0 |
| f0f1 atp synthase subunit delta | DD563_09435 | Not Available | Negative | 1913861 - 1914427 | 19702.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
