Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama family transporter | DD563_09335 | Not Available | Negative | 1896348 - 1897226 | 29506.8 |
| n-acetyltransferase | DD563_09340 | Not Available | Negative | 1897227 - 1897730 | 17916.6 |
| chaperonin groel | DD563_09345 | Not Available | Negative | 1897924 - 1899573 | 57774.8 |
| co-chaperone groes | DD563_09350 | Not Available | Negative | 1899647 - 1899934 | 10318.4 |
| hypothetical protein | DD563_09355 | Not Available | Negative | 1900350 - 1901045 | 24563.8 |
| manganese-dependent inorganic pyrophosphatase | DD563_09360 | Not Available | Positive | 1901142 - 1902062 | 33006.0 |
| tigr01459 family had-type hydrolase | DD563_09370 | Not Available | Positive | 1902446 - 1903336 | 31900.1 |
| (r)-hydratase | DD563_09375 | Not Available | Positive | 1903439 - 1903882 | 16129.7 |
| bifunctional riboflavin kinase/fmn adenylyltransferase | DD563_09380 | Not Available | Positive | 1904003 - 1904941 | 33234.6 |
| ycgn family cysteine cluster protein | DD563_09385 | Not Available | Positive | 1904938 - 1905381 | 17056.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
