Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DD563_09285 | Not Available | Positive | 1886760 - 1887230 | 16811.5 |
| hypothetical protein | DD563_09290 | Not Available | Negative | 1887330 - 1887512 | 6798.36 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DD563_09295 | Not Available | Positive | 1887700 - 1889265 | 55107.6 |
| peptidase m23 | DD563_09300 | Not Available | Positive | 1889262 - 1890410 | 39810.7 |
| peptidase s41 | DD563_09305 | Not Available | Positive | 1890413 - 1891750 | 47982.4 |
| rna pyrophosphohydrolase | DD563_09310 | Not Available | Positive | 1891899 - 1892381 | 18253.8 |
| hypothetical protein | DD563_09315 | Not Available | Positive | 1892378 - 1892866 | 16737.0 |
| lytic murein transglycosylase | DD563_09320 | Not Available | Negative | 1892897 - 1894264 | 50096.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | DD563_09325 | Not Available | Negative | 1894373 - 1895518 | 40027.3 |
| acetyltransferase | DD563_09330 | Not Available | Negative | 1895515 - 1896237 | 26047.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
