Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease hii | DD563_09230 | Not Available | Negative | 1878615 - 1879235 | 22110.7 |
| hypothetical protein | DD563_09235 | Not Available | Negative | 1879317 - 1879682 | 13719.2 |
| hypothetical protein | DD563_09240 | Not Available | Positive | 1879865 - 1880095 | 8292.29 |
| hypothetical protein | DD563_09245 | Not Available | Positive | 1880106 - 1880810 | 25219.2 |
| hypothetical protein | DD563_09250 | Not Available | Negative | 1880838 - 1881062 | 8736.35 |
| aspartate-semialdehyde dehydrogenase | DD563_09260 | Not Available | Negative | 1881480 - 1882502 | 37269.5 |
| mfs transporter | DD563_09265 | Not Available | Negative | 1882567 - 1883763 | 41075.4 |
| acetoin utilization protein | DD563_09270 | Not Available | Negative | 1883804 - 1884730 | 32139.4 |
| mechanosensitive ion channel protein | DD563_09275 | Not Available | Positive | 1884834 - 1886201 | 50728.4 |
| ribosome silencing factor | DD563_09280 | Not Available | Positive | 1886395 - 1886763 | 13560.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
