Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4170 domain-containing protein | DD563_09180 | Not Available | Positive | 1869495 - 1869737 | 9211.77 |
| 3-deoxy-d-manno-octulosonic acid transferase | DD563_09185 | Not Available | Positive | 1869745 - 1870950 | 43216.2 |
| tetraacyldisaccharide 4'-kinase | DD563_09190 | Not Available | Positive | 1870947 - 1871930 | 34509.9 |
| coa transferase | DD563_09195 | Not Available | Negative | 1871948 - 1873054 | 38761.2 |
| thiol-disulfide oxidoreductase | DD563_09200 | Not Available | Negative | 1873057 - 1873731 | 24388.5 |
| duf721 domain-containing protein | DD563_09205 | Not Available | Negative | 1873750 - 1874259 | 18089.6 |
| a/g-specific adenine glycosylase | DD563_09210 | Not Available | Positive | 1874351 - 1875421 | 38945.6 |
| alkane 1-monooxygenase | DD563_09215 | Not Available | Positive | 1875441 - 1876574 | 44093.9 |
| cupin | DD563_09220 | Not Available | Negative | 1876577 - 1877242 | 23934.0 |
| modification methylase | DD563_09225 | Not Available | Negative | 1877398 - 1878504 | 41280.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
