Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| short-chain dehydrogenase | DD563_09130 | Not Available | Positive | 1861891 - 1862640 | 25526.7 |
| enoyl-coa hydratase | DD563_09135 | Not Available | Positive | 1862637 - 1863245 | 20971.7 |
| hypothetical protein | DD563_09140 | Not Available | Negative | 1863355 - 1863534 | 6611.02 |
| atp-dependent protease | DD563_09145 | Not Available | Negative | 1863531 - 1864175 | 24072.9 |
| co-chaperone ybbn | DD563_09150 | Not Available | Negative | 1864203 - 1865111 | 31235.6 |
| exodeoxyribonuclease iii | DD563_09155 | Not Available | Negative | 1865264 - 1866052 | 29695.0 |
| dna-binding response regulator | DD563_09160 | Not Available | Negative | 1866304 - 1866990 | 25673.8 |
| gtp cyclohydrolase ii | DD563_09165 | Not Available | Positive | 1867175 - 1868305 | 39713.9 |
| 4-oxalocrotonate tautomerase | DD563_09170 | Not Available | Negative | 1868325 - 1868519 | 7134.59 |
| glutamine amidotransferase | DD563_09175 | Not Available | Negative | 1868561 - 1869325 | 27662.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
