Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil-dna glycosylase | DD563_09080 | Not Available | Negative | 1852832 - 1853605 | 27364.2 |
| aspartate carbamoyltransferase catalytic subunit | DD563_09085 | Not Available | Positive | 1853764 - 1854720 | 34716.5 |
| hypothetical protein | DD563_09090 | Not Available | Positive | 1854749 - 1855288 | 19074.9 |
| dihydroorotase | DD563_09095 | Not Available | Positive | 1855392 - 1856681 | 45634.0 |
| acyl-phosphate glycerol 3-phosphate acyltransferase | DD563_09100 | Not Available | Positive | 1856681 - 1857289 | 20831.3 |
| hypothetical protein | DD563_09105 | Not Available | Positive | 1857286 - 1857540 | 9140.05 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | DD563_09110 | Not Available | Negative | 1857537 - 1858322 | 27803.8 |
| modulator protein | DD563_09115 | Not Available | Negative | 1858309 - 1859655 | 46968.4 |
| ribulose phosphate epimerase | DD563_09120 | Not Available | Positive | 1859770 - 1860153 | 13115.5 |
| hypothetical protein | DD563_09125 | Not Available | Negative | 1860201 - 1861919 | 60205.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
