Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amine oxidase | DD563_00780 | Not Available | Negative | 164421 - 165743 | 47927.6 |
| hypothetical protein | DD563_00785 | Not Available | Negative | 165821 - 165991 | 5947.18 |
| hypothetical protein | DD563_00800 | Not Available | Negative | 168137 - 168334 | 7457.67 |
| hypothetical protein | DD563_00805 | Not Available | Negative | 168387 - 169091 | 26445.8 |
| aminotransferase | DD563_00810 | Not Available | Negative | 169115 - 170221 | 41231.4 |
| glycosyl transferase family 2 | DD563_00815 | Not Available | Negative | 170232 - 171182 | 34936.4 |
| fkbm family methyltransferase | DD563_00820 | Not Available | Negative | 171204 - 171974 | 27971.1 |
| Trna-ser | Not Available | Not Available | Positive | 172553 - 172642 | Not Available |
| spor domain-containing protein | DD563_00830 | Not Available | Positive | 172883 - 173770 | 30550.2 |
| d-alanyl-d-alanine carboxypeptidase | DD563_00835 | Not Available | Positive | 173792 - 174955 | 41269.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
