Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aa3-type cytochrome c oxidase subunit iv | DD563_09030 | Not Available | Negative | 1840626 - 1840760 | 4897.91 |
| hypothetical protein | DD563_09035 | Not Available | Negative | 1841266 - 1841718 | 16320.2 |
| mbl fold hydrolase | DD563_09040 | Not Available | Negative | 1841722 - 1842756 | 38432.5 |
| acyl-coa dehydrogenase | DD563_09045 | Not Available | Negative | 1842759 - 1844462 | 59801.8 |
| threonylcarbamoyl-amp synthase | DD563_09050 | Not Available | Positive | 1844604 - 1845554 | 32201.4 |
| hypothetical protein | DD563_09055 | Not Available | Negative | 1845715 - 1846269 | 19158.2 |
| hypothetical protein | DD563_09060 | Not Available | Positive | 1846479 - 1847297 | 28541.4 |
| acriflavine resistance protein b | DD563_09065 | Not Available | Negative | 1847314 - 1850706 | 121124.0 |
| efflux transporter periplasmic adaptor subunit | DD563_09070 | Not Available | Negative | 1850710 - 1852188 | 52590.9 |
| molybdenum cofactor biosynthesis protein b | DD563_09075 | Not Available | Negative | 1852293 - 1852835 | 19758.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
