Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase | DD563_08980 | Not Available | Negative | 1826060 - 1826983 | 33541.1 |
| cell wall hydrolase | DD563_08985 | Not Available | Negative | 1827077 - 1827637 | 20821.7 |
| pyruvate, phosphate dikinase | DD563_08990 | Not Available | Negative | 1827870 - 1830413 | 91355.0 |
| glycine--trna ligase subunit beta | DD563_08995 | Not Available | Negative | 1830498 - 1832828 | 85014.9 |
| histidine kinase | DD563_09000 | Not Available | Negative | 1832830 - 1833351 | 19015.4 |
| glycine--trna ligase subunit alpha | DD563_09005 | Not Available | Negative | 1833351 - 1834283 | 34607.7 |
| peptidoglycan-binding protein | DD563_09010 | Not Available | Positive | 1834506 - 1836239 | 61854.0 |
| abc transporter atp-binding protein | DD563_09015 | Not Available | Positive | 1836294 - 1838159 | 68225.8 |
| aspartate aminotransferase family protein | DD563_09020 | Not Available | Positive | 1838444 - 1839841 | 50779.7 |
| hypothetical protein | DD563_09025 | Not Available | Negative | 1839961 - 1840566 | 21935.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
