Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | DD563_08930 | Not Available | Negative | 1817568 - 1818212 | 23603.5 |
| pyrimidine 5'-nucleotidase | DD563_08935 | Not Available | Positive | 1818335 - 1818991 | 24306.8 |
| hypothetical protein | DD563_08940 | Not Available | Positive | 1819078 - 1819293 | 7754.8 |
| ubih/ubif family hydroxylase | DD563_08945 | Not Available | Positive | 1819369 - 1820565 | 42795.8 |
| aminotransferase | DD563_08950 | Not Available | Negative | 1820583 - 1821710 | 40357.2 |
| asnc family transcriptional regulator | DD563_08955 | Not Available | Negative | 1821773 - 1822231 | 17021.7 |
| asnc family transcriptional regulator | DD563_08960 | Not Available | Negative | 1822228 - 1822683 | 17087.8 |
| ketol-acid reductoisomerase | DD563_08965 | Not Available | Positive | 1822813 - 1823835 | 37015.6 |
| eama family transporter | DD563_08970 | Not Available | Positive | 1824120 - 1825046 | 32302.3 |
| dihydropteroate synthase | DD563_08975 | Not Available | Negative | 1825043 - 1826059 | 34884.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
