Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DD563_08825 | Not Available | Positive | 1794833 - 1796347 | 53289.1 |
| esterase | DD563_08830 | Not Available | Negative | 1796325 - 1797203 | 31949.7 |
| glutathione synthase | DD563_08835 | Not Available | Negative | 1797200 - 1798135 | 34652.7 |
| pii uridylyl-transferase | DD563_08840 | Not Available | Negative | 1798197 - 1798607 | 15039.8 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | DD563_08845 | Not Available | Negative | 1798604 - 1799464 | 30067.2 |
| penicillin-binding protein activator | DD563_08850 | Not Available | Positive | 1799560 - 1800747 | 40488.3 |
| [protein-pii] uridylyltransferase | DD563_08855 | Not Available | Positive | 1800784 - 1803516 | 103330.0 |
| murein biosynthesis integral membrane protein murj | DD563_08860 | Not Available | Positive | 1803525 - 1805048 | 54078.8 |
| rhomboid family intramembrane serine protease | DD563_08865 | Not Available | Negative | 1805064 - 1805750 | 24382.9 |
| tryptophan--trna ligase | DD563_08870 | Not Available | Positive | 1805825 - 1806856 | 37190.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
