Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein | DD563_08775 | Not Available | Negative | 1785775 - 1786230 | 16620.2 |
| peptidase m3 | DD563_08780 | Not Available | Negative | 1786295 - 1788307 | 73003.4 |
| molybdopterin biosynthesis protein | DD563_08785 | Not Available | Negative | 1788320 - 1789375 | 36905.3 |
| dutp diphosphatase | DD563_08790 | Not Available | Negative | 1789375 - 1789830 | 15382.4 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | DD563_08795 | Not Available | Negative | 1789871 - 1791064 | 41125.8 |
| hypothetical protein | DD563_08800 | Not Available | Negative | 1791144 - 1791944 | 27430.8 |
| rna polymerase factor sigma-32 | DD563_08805 | Not Available | Negative | 1791941 - 1792819 | 33662.1 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | DD563_08810 | Not Available | Positive | 1792922 - 1793443 | 18007.9 |
| histidine phosphatase family protein | DD563_08815 | Not Available | Positive | 1793440 - 1794012 | 21094.9 |
| glutathione s-transferase | DD563_08820 | Not Available | Positive | 1794071 - 1794766 | 25571.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
