Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-8-phosphooctulonate synthase | DD563_08725 | Not Available | Positive | 1776738 - 1777577 | 29461.7 |
| phosphomannomutase/phosphoglucomutase | DD563_08730 | Not Available | Positive | 1777644 - 1779083 | 52070.4 |
| atpase | DD563_08735 | Not Available | Positive | 1779308 - 1780834 | 56145.3 |
| short-chain dehydrogenase | DD563_08740 | Not Available | Positive | 1780831 - 1781541 | 25050.3 |
| hypothetical protein | DD563_08745 | Not Available | Negative | 1781618 - 1782370 | 27246.1 |
| permease | DD563_08750 | Not Available | Negative | 1782370 - 1783287 | 32314.6 |
| threonine transporter | DD563_08755 | Not Available | Negative | 1783415 - 1783999 | 19535.4 |
| ribosomal-protein-alanine acetyltransferase | DD563_08760 | Not Available | Negative | 1784099 - 1784515 | 14481.3 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DD563_08765 | Not Available | Negative | 1784502 - 1785101 | 20018.0 |
| nifu family protein | DD563_08770 | Not Available | Negative | 1785091 - 1785654 | 19892.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
