Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 2 | DD563_08675 | Not Available | Positive | 1766902 - 1768842 | 72072.1 |
| rod shape-determining protein roda | DD563_08680 | Not Available | Positive | 1768839 - 1769978 | 41451.0 |
| glyoxylate/hydroxypyruvate reductase a | DD563_08685 | Not Available | Positive | 1769983 - 1770912 | 33314.9 |
| hypothetical protein | DD563_08690 | Not Available | Negative | 1770925 - 1771710 | 26946.9 |
| uracil-dna glycosylase | DD563_08695 | Not Available | Negative | 1771703 - 1772308 | 22277.8 |
| hypothetical protein | DD563_08700 | Not Available | Negative | 1772310 - 1772813 | 18069.4 |
| transcriptional regulator | DD563_08705 | Not Available | Positive | 1772873 - 1773217 | 12057.4 |
| permease | DD563_08710 | Not Available | Positive | 1773210 - 1774232 | 35460.1 |
| abc transporter | DD563_08715 | Not Available | Positive | 1774423 - 1775082 | 24632.7 |
| capsule biosynthesis protein | DD563_08720 | Not Available | Positive | 1775060 - 1776736 | 60575.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
