Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated endonuclease cas2 | DD563_00730 | Not Available | Positive | 150818 - 151123 | 12026.4 |
| hypothetical protein | DD563_00735 | Not Available | Positive | 155281 - 155661 | 13696.7 |
| hypothetical protein | DD563_00740 | Not Available | Positive | 157451 - 157744 | 10781.9 |
| xre family transcriptional regulator | DD563_00745 | Not Available | Positive | 157856 - 158086 | 8640.31 |
| integrase | DD563_00750 | Not Available | Negative | 158083 - 159654 | 59885.4 |
| hypothetical protein | DD563_00755 | Not Available | Negative | 159846 - 160070 | 7722.86 |
| dna invertase | DD563_00760 | Not Available | Negative | 160173 - 160739 | 20369.6 |
| chromosome partitioning protein parb | DD563_00765 | Not Available | Negative | 161318 - 162250 | 34466.2 |
| hypothetical protein | DD563_00770 | Not Available | Negative | 162482 - 163954 | 54420.6 |
| Trna-ser | Not Available | Not Available | Positive | 164018 - 164107 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
