Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent oxidoreductase | DD563_08530 | Not Available | Negative | 1741929 - 1743260 | 46418.3 |
| 50s ribosomal protein l25 | DD563_08535 | Not Available | Positive | 1743485 - 1744138 | 23757.2 |
| aminoacyl-trna hydrolase | DD563_08540 | Not Available | Positive | 1744306 - 1744980 | 24298.9 |
| duf2237 domain-containing protein | DD563_08545 | Not Available | Positive | 1745071 - 1745448 | 13645.3 |
| tetr/acrr family transcriptional regulator | DD563_08550 | Not Available | Negative | 1745796 - 1746386 | 21321.7 |
| hypothetical protein | DD563_08555 | Not Available | Positive | 1746524 - 1747039 | 17690.7 |
| glutaredoxin 3 | DD563_08560 | Not Available | Positive | 1747102 - 1747374 | 9883.08 |
| Trna-pseudo | Not Available | Not Available | Positive | 1747615 - 1747694 | Not Available |
| hypothetical protein | DD563_08565 | Not Available | Positive | 1747825 - 1749045 | 45509.9 |
| dna-binding protein | DD563_08570 | Not Available | Positive | 1749291 - 1749542 | 9381.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
