Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease bn | DD563_08425 | Not Available | Negative | 1721287 - 1722120 | 28873.9 |
| hypothetical protein | DD563_08430 | Not Available | Negative | 1722145 - 1722462 | 11551.6 |
| choline dehydrogenase | DD563_08440 | Not Available | Negative | 1723121 - 1724797 | 60797.9 |
| transcriptional regulator beti | DD563_08445 | Not Available | Positive | 1724912 - 1725595 | 25127.4 |
| dehydrogenase | DD563_08450 | Not Available | Positive | 1725625 - 1726788 | 40578.9 |
| dihydrolipoyl dehydrogenase | DD563_08455 | Not Available | Positive | 1726998 - 1728386 | 48876.0 |
| hypothetical protein | DD563_08460 | Not Available | Positive | 1728308 - 1729195 | 30600.6 |
| pyridoxamine 5'-phosphate oxidase | DD563_08465 | Not Available | Negative | 1729200 - 1729802 | 21509.6 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | DD563_08470 | Not Available | Negative | 1729789 - 1730529 | 27094.6 |
| cell division protein ftsx | DD563_08475 | Not Available | Negative | 1730526 - 1731437 | 32127.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
