Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine phosphate synthase | DD563_08375 | Not Available | Negative | 1713475 - 1714071 | 21731.4 |
| thiazole synthase | DD563_08380 | Not Available | Negative | 1714068 - 1714841 | 27101.7 |
| thiamine biosynthesis protein this | DD563_08385 | Not Available | Negative | 1714841 - 1715038 | 6804.03 |
| glycine oxidase thio | DD563_08390 | Not Available | Negative | 1715007 - 1716020 | 36308.8 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DD563_08395 | Not Available | Negative | 1716026 - 1716838 | 27194.9 |
| atpase | DD563_08400 | Not Available | Negative | 1717266 - 1719008 | 63234.4 |
| rna polymerase subunit sigma | DD563_08405 | Not Available | Negative | 1719008 - 1719565 | 20556.2 |
| regulator | DD563_08410 | Not Available | Negative | 1719562 - 1719726 | 6172.2 |
| response regulator | DD563_08415 | Not Available | Positive | 1719831 - 1720646 | 29683.4 |
| dna starvation/stationary phase protection protein | DD563_08420 | Not Available | Negative | 1720726 - 1721223 | 18099.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
