Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| neutral zinc metallopeptidase | DD563_08275 | Not Available | Positive | 1692099 - 1692515 | 15527.0 |
| Trna-leu | Not Available | Not Available | Positive | 1692722 - 1692807 | Not Available |
| complex i ndufa9 subunit family protein | DD563_08285 | Not Available | Positive | 1692969 - 1693949 | 35326.9 |
| undecaprenyl-diphosphatase | DD563_08290 | Not Available | Positive | 1693965 - 1694768 | 28753.0 |
| dihydropyrimidine dehydrogenase | DD563_08295 | Not Available | Positive | 1694934 - 1696352 | 51079.5 |
| aldehyde-activating protein | DD563_08300 | Not Available | Positive | 1696388 - 1696807 | 15020.7 |
| glutamate synthase large subunit | DD563_08305 | Not Available | Positive | 1696884 - 1701416 | 163031.0 |
| alcohol dehydrogenase | DD563_08310 | Not Available | Negative | 1701503 - 1702648 | 40086.1 |
| aldehyde dehydrogenase | DD563_08315 | Not Available | Negative | 1702645 - 1704027 | 49031.5 |
| glutamine synthetase | DD563_08320 | Not Available | Negative | 1704125 - 1705483 | 49967.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
