Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iv subunit b | DD563_08225 | Not Available | Positive | 1680629 - 1682587 | 71437.0 |
| cold-shock protein | DD563_08230 | Not Available | Positive | 1682949 - 1683155 | 7213.46 |
| arylesterase | DD563_08235 | Not Available | Negative | 1683202 - 1683885 | 23480.1 |
| abc transporter | DD563_08240 | Not Available | Positive | 1683884 - 1684567 | 23497.5 |
| drug:proton antiporter | DD563_08245 | Not Available | Positive | 1684564 - 1687080 | 86446.0 |
| rrf2 family transcriptional regulator | DD563_08250 | Not Available | Negative | 1687083 - 1687535 | 15981.4 |
| gamma-glutamylcyclotransferase | DD563_08255 | Not Available | Positive | 1687623 - 1688201 | 20958.7 |
| mate family efflux transporter | DD563_08260 | Not Available | Negative | 1688172 - 1689512 | 46303.9 |
| glutamate--trna ligase | DD563_08265 | Not Available | Negative | 1689647 - 1690969 | 48687.9 |
| mbl fold metallo-hydrolase | DD563_08270 | Not Available | Positive | 1691118 - 1692035 | 32355.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
